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1004 lines
33 KiB
1004 lines
33 KiB
// Copyright Daniel Wallin 2007. Use, modification and distribution is |
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// subject to the Boost Software License, Version 1.0. (See accompanying |
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// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt) |
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#ifndef BOOST_GRAPH_DISTRIBUTED_ADJLIST_SERIALIZATION_070925_HPP |
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#define BOOST_GRAPH_DISTRIBUTED_ADJLIST_SERIALIZATION_070925_HPP |
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#ifndef BOOST_GRAPH_USE_MPI |
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#error "Parallel BGL files should not be included unless <boost/graph/use_mpi.hpp> has been included" |
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#endif |
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# include <boost/assert.hpp> |
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# include <boost/lexical_cast.hpp> |
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# include <boost/foreach.hpp> |
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# include <boost/filesystem/path.hpp> |
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# include <boost/filesystem/operations.hpp> |
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# include <cctype> |
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# include <fstream> |
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namespace boost { |
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namespace detail { namespace parallel |
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{ |
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// Wraps a local descriptor, making it serializable. |
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template <class Local> |
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struct serializable_local_descriptor |
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{ |
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serializable_local_descriptor() |
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{} |
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serializable_local_descriptor(Local local) |
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: local(local) |
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{} |
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operator Local const&() const |
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{ |
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return local; |
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} |
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bool operator==(serializable_local_descriptor const& other) const |
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{ |
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return local == other.local; |
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} |
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bool operator<(serializable_local_descriptor const& other) const |
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{ |
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return local < other.local; |
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} |
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template <class Archive> |
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void serialize(Archive& ar, const unsigned int /*version*/) |
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{ |
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ar & unsafe_serialize(local); |
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} |
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Local local; |
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}; |
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template <class Vertex, class Properties> |
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struct pending_edge |
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{ |
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pending_edge( |
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Vertex source, Vertex target |
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, Properties properties, void* property_ptr |
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) |
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: source(source) |
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, target(target) |
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, properties(properties) |
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, property_ptr(property_ptr) |
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{} |
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Vertex source; |
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Vertex target; |
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Properties properties; |
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void* property_ptr; |
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}; |
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inline bool is_digit(char c) |
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{ |
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return (bool)std::isdigit(c); |
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} |
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inline std::vector<int> |
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available_process_files(std::string const& filename) |
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{ |
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if (!filesystem::exists(filename)) |
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return std::vector<int>(); |
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std::vector<int> result; |
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for (filesystem::directory_iterator i(filename), end; i != end; ++i) |
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{ |
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if (!filesystem::is_regular(*i)) |
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boost::throw_exception(std::runtime_error("directory contains non-regular entries")); |
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std::string process_name = i->path().filename().string(); |
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for (std::string::size_type i = 0; i < process_name.size(); ++i) |
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if (!is_digit(process_name[i])) |
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boost::throw_exception(std::runtime_error("directory contains files with invalid names")); |
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result.push_back(boost::lexical_cast<int>(process_name)); |
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} |
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return result; |
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} |
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template <class Archive, class Tag, class T, class Base> |
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void maybe_load_properties( |
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Archive& ar, char const* name, property<Tag, T, Base>& properties) |
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{ |
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ar >> serialization::make_nvp(name, get_property_value(properties, Tag())); |
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maybe_load_properties(ar, name, static_cast<Base&>(properties)); |
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} |
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template <class Archive> |
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void maybe_load_properties( |
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Archive&, char const*, no_property&) |
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{} |
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template <class Archive, typename Bundle> |
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void maybe_load_properties( |
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Archive& ar, char const* name, Bundle& bundle) |
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{ |
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ar >> serialization::make_nvp(name, bundle); |
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no_property prop; |
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maybe_load_properties(ar, name, prop); |
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} |
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template <class Graph, class Archive, class VertexListS> |
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struct graph_loader |
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{ |
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typedef typename Graph::vertex_descriptor vertex_descriptor; |
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typedef typename Graph::local_vertex_descriptor local_vertex_descriptor; |
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typedef typename Graph::vertex_property_type vertex_property_type; |
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typedef typename Graph::edge_descriptor edge_descriptor; |
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typedef typename Graph::local_edge_descriptor local_edge_descriptor; |
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typedef typename Graph::edge_property_type edge_property_type; |
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typedef typename Graph::process_group_type process_group_type; |
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typedef typename process_group_type::process_id_type process_id_type; |
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typedef typename Graph::directed_selector directed_selector; |
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typedef typename mpl::if_< |
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is_same<VertexListS, defaultS>, vecS, VertexListS |
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>::type vertex_list_selector; |
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typedef pending_edge<vertex_descriptor, edge_property_type> |
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pending_edge_type; |
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typedef serializable_local_descriptor<local_vertex_descriptor> |
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serializable_vertex_descriptor; |
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graph_loader(Graph& g, Archive& ar) |
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: m_g(g) |
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, m_ar(ar) |
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, m_pg(g.process_group()) |
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, m_requested_vertices(num_processes(m_pg)) |
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, m_remote_vertices(num_processes(m_pg)) |
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, m_property_ptrs(num_processes(m_pg)) |
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{ |
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g.clear(); |
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load_prefix(); |
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load_vertices(); |
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load_edges(); |
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ar >> make_nvp("distribution", m_g.distribution()); |
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} |
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private: |
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struct pending_in_edge |
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{ |
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pending_in_edge( |
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vertex_descriptor u, vertex_descriptor v, void* property_ptr |
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) |
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: u(u) |
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, v(v) |
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, property_ptr(property_ptr) |
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{} |
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vertex_descriptor u; |
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vertex_descriptor v; |
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void* property_ptr; |
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}; |
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bool is_root() const |
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{ |
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return process_id(m_pg) == 0; |
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} |
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template <class T> |
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serialization::nvp<T> const make_nvp(char const* name, T& value) const |
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{ |
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return serialization::nvp<T>(name, value); |
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} |
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void load_prefix(); |
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void load_vertices(); |
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template <class Anything> |
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void maybe_load_and_store_local_vertex(Anything); |
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void maybe_load_and_store_local_vertex(vecS); |
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void load_edges(); |
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void load_in_edges(bidirectionalS); |
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void load_in_edges(directedS); |
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void add_pending_in_edge( |
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vertex_descriptor u, vertex_descriptor v, void* property_ptr, vecS); |
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template <class Anything> |
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void add_pending_in_edge( |
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vertex_descriptor u, vertex_descriptor v, void* property_ptr, Anything); |
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template <class Anything> |
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void add_edge( |
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vertex_descriptor u, vertex_descriptor v |
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, edge_property_type const& property, void* property_ptr, Anything); |
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void add_edge( |
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vertex_descriptor u, vertex_descriptor v |
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, edge_property_type const& property, void* property_ptr, vecS); |
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void add_remote_vertex_request( |
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vertex_descriptor u, vertex_descriptor v, directedS); |
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void add_remote_vertex_request( |
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vertex_descriptor u, vertex_descriptor v, bidirectionalS); |
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void add_in_edge( |
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edge_descriptor const&, void*, directedS); |
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void add_in_edge( |
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edge_descriptor const& edge, void* old_property_ptr, bidirectionalS); |
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void resolve_remote_vertices(directedS); |
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void resolve_remote_vertices(bidirectionalS); |
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vertex_descriptor resolve_remote_vertex(vertex_descriptor u) const; |
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vertex_descriptor resolve_remote_vertex(vertex_descriptor u, vecS) const; |
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template <class Anything> |
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vertex_descriptor resolve_remote_vertex(vertex_descriptor u, Anything) const; |
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void resolve_property_ptrs(); |
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void commit_pending_edges(vecS); |
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template <class Anything> |
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void commit_pending_edges(Anything); |
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void commit_pending_in_edges(directedS); |
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void commit_pending_in_edges(bidirectionalS); |
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void* maybe_load_property_ptr(directedS) { return 0; } |
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void* maybe_load_property_ptr(bidirectionalS); |
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Graph& m_g; |
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Archive& m_ar; |
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process_group_type m_pg; |
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std::vector<process_id_type> m_id_mapping; |
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// Maps local vertices as loaded from the archive to |
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// the ones actually added to the graph. Only used |
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// when !vecS. |
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std::map<local_vertex_descriptor, local_vertex_descriptor> m_local_vertices; |
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// This is the list of remote vertex descriptors that we |
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// are going to receive from other processes. This is |
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// kept sorted so that we can determine the position of |
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// the matching vertex descriptor in m_remote_vertices. |
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std::vector<std::vector<serializable_vertex_descriptor> > m_requested_vertices; |
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// This is the list of remote vertex descriptors that |
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// we send and receive from other processes. |
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std::vector<std::vector<serializable_vertex_descriptor> > m_remote_vertices; |
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// ... |
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std::vector<pending_edge_type> m_pending_edges; |
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// The pending in-edges that will be added in the commit step, after |
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// the remote vertex descriptors has been resolved. Only used |
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// when bidirectionalS and !vecS. |
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std::vector<pending_in_edge> m_pending_in_edges; |
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std::vector<std::vector<unsafe_pair<void*,void*> > > m_property_ptrs; |
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}; |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::load_prefix() |
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{ |
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typename process_group_type::process_size_type num_processes_; |
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m_ar >> make_nvp("num_processes", num_processes_); |
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if (num_processes_ != num_processes(m_pg)) |
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boost::throw_exception(std::runtime_error("number of processes mismatch")); |
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process_id_type old_id; |
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m_ar >> make_nvp("id", old_id); |
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std::vector<typename Graph::distribution_type::size_type> mapping; |
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m_ar >> make_nvp("mapping", mapping); |
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// Fetch all the old id's from the other processes. |
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std::vector<process_id_type> old_ids; |
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all_gather(m_pg, &old_id, &old_id+1, old_ids); |
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m_id_mapping.resize(num_processes(m_pg), -1); |
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for (process_id_type i = 0; i < num_processes(m_pg); ++i) |
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{ |
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# ifdef PBGL_SERIALIZE_DEBUG |
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if (is_root()) |
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std::cout << i << " used to be " << old_ids[i] << "\n"; |
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# endif |
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BOOST_ASSERT(m_id_mapping[old_ids[i]] == -1); |
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m_id_mapping[old_ids[i]] = i; |
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} |
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std::vector<typename Graph::distribution_type::size_type> new_mapping( |
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mapping.size()); |
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for (int i = 0; i < num_processes(m_pg); ++i) |
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{ |
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new_mapping[mapping[old_ids[i]]] = i; |
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} |
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m_g.distribution().assign_mapping( |
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new_mapping.begin(), new_mapping.end()); |
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} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::load_vertices() |
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{ |
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int V; |
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m_ar >> BOOST_SERIALIZATION_NVP(V); |
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# ifdef PBGL_SERIALIZE_DEBUG |
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if (is_root()) |
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std::cout << "Loading vertices\n"; |
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# endif |
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for (int i = 0; i < V; ++i) |
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{ |
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maybe_load_and_store_local_vertex(vertex_list_selector()); |
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} |
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} |
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template <class Graph, class Archive, class VertexListS> |
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template <class Anything> |
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void graph_loader<Graph, Archive, VertexListS>::maybe_load_and_store_local_vertex(Anything) |
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{ |
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// Load the original vertex descriptor |
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local_vertex_descriptor local; |
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m_ar >> make_nvp("local", unsafe_serialize(local)); |
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// Load the properties |
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vertex_property_type property; |
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detail::parallel::maybe_load_properties(m_ar, "vertex_property", |
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property); |
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// Add the vertex |
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vertex_descriptor v(process_id(m_pg), add_vertex(property, m_g.base())); |
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if (m_g.on_add_vertex) |
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m_g.on_add_vertex(v, m_g); |
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// Create the mapping from the "old" local descriptor to the new |
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// local descriptor. |
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m_local_vertices[local] = v.local; |
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} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::maybe_load_and_store_local_vertex(vecS) |
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{ |
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// Load the properties |
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vertex_property_type property; |
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detail::parallel::maybe_load_properties(m_ar, "vertex_property", |
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property); |
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// Add the vertex |
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vertex_descriptor v(process_id(m_pg), |
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add_vertex(m_g.build_vertex_property(property), |
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m_g.base())); |
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if (m_g.on_add_vertex) |
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m_g.on_add_vertex(v, m_g); |
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} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::load_edges() |
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{ |
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int E; |
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m_ar >> BOOST_SERIALIZATION_NVP(E); |
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# ifdef PBGL_SERIALIZE_DEBUG |
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if (is_root()) |
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std::cout << "Loading edges\n"; |
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# endif |
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for (int i = 0; i < E; ++i) |
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{ |
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local_vertex_descriptor local_src; |
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process_id_type target_owner; |
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local_vertex_descriptor local_tgt; |
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m_ar >> make_nvp("source", unsafe_serialize(local_src)); |
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m_ar >> make_nvp("target_owner", target_owner); |
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m_ar >> make_nvp("target", unsafe_serialize(local_tgt)); |
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process_id_type new_src_owner = process_id(m_pg); |
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process_id_type new_tgt_owner = m_id_mapping[target_owner]; |
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vertex_descriptor source(new_src_owner, local_src); |
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vertex_descriptor target(new_tgt_owner, local_tgt); |
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edge_property_type properties; |
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detail::parallel::maybe_load_properties(m_ar, "edge_property", properties); |
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void* property_ptr = maybe_load_property_ptr(directed_selector()); |
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add_edge(source, target, properties, property_ptr, vertex_list_selector()); |
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} |
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load_in_edges(directed_selector()); |
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commit_pending_edges(vertex_list_selector()); |
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} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::load_in_edges(bidirectionalS) |
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{ |
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std::size_t I; |
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m_ar >> BOOST_SERIALIZATION_NVP(I); |
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# ifdef PBGL_SERIALIZE_DEBUG |
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if (is_root()) |
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std::cout << "Loading in-edges\n"; |
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# endif |
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for (int i = 0; i < I; ++i) |
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{ |
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process_id_type src_owner; |
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local_vertex_descriptor local_src; |
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local_vertex_descriptor local_target; |
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void* property_ptr; |
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m_ar >> make_nvp("src_owner", src_owner); |
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m_ar >> make_nvp("source", unsafe_serialize(local_src)); |
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m_ar >> make_nvp("target", unsafe_serialize(local_target)); |
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m_ar >> make_nvp("property_ptr", unsafe_serialize(property_ptr)); |
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src_owner = m_id_mapping[src_owner]; |
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vertex_descriptor u(src_owner, local_src); |
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vertex_descriptor v(process_id(m_pg), local_target); |
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add_pending_in_edge(u, v, property_ptr, vertex_list_selector()); |
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} |
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} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::load_in_edges(directedS) |
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{} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::add_pending_in_edge( |
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vertex_descriptor u, vertex_descriptor v, void* property_ptr, vecS) |
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{ |
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m_pending_in_edges.push_back(pending_in_edge(u,v,property_ptr)); |
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} |
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template <class Graph, class Archive, class VertexListS> |
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template <class Anything> |
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void graph_loader<Graph, Archive, VertexListS>::add_pending_in_edge( |
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vertex_descriptor u, vertex_descriptor v, void* property_ptr, Anything) |
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{ |
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// u and v represent the out-edge here, meaning v is local |
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// to us, and u is always remote. |
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m_pending_in_edges.push_back(pending_in_edge(u,v,property_ptr)); |
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add_remote_vertex_request(v, u, bidirectionalS()); |
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} |
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template <class Graph, class Archive, class VertexListS> |
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template <class Anything> |
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void graph_loader<Graph, Archive, VertexListS>::add_edge( |
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vertex_descriptor u, vertex_descriptor v |
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, edge_property_type const& property, void* property_ptr, Anything) |
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{ |
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m_pending_edges.push_back(pending_edge_type(u, v, property, property_ptr)); |
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add_remote_vertex_request(u, v, directed_selector()); |
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} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::add_remote_vertex_request( |
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vertex_descriptor u, vertex_descriptor v, directedS) |
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{ |
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// We have to request the remote vertex. |
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m_requested_vertices[owner(v)].push_back(local(v)); |
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} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::add_remote_vertex_request( |
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vertex_descriptor u, vertex_descriptor v, bidirectionalS) |
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{ |
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// If the edge spans to another process, we know |
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// that that process has a matching in-edge, so |
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// we can just send our vertex. No requests |
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// necessary. |
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if (owner(v) != m_g.processor()) |
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{ |
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m_remote_vertices[owner(v)].push_back(local(u)); |
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m_requested_vertices[owner(v)].push_back(local(v)); |
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} |
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} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::add_edge( |
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vertex_descriptor u, vertex_descriptor v |
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, edge_property_type const& property, void* property_ptr, vecS) |
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{ |
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std::pair<local_edge_descriptor, bool> inserted = |
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detail::parallel::add_local_edge( |
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local(u), local(v) |
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, m_g.build_edge_property(property), m_g.base()); |
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BOOST_ASSERT(inserted.second); |
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put(edge_target_processor_id, m_g.base(), inserted.first, owner(v)); |
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edge_descriptor e(owner(u), owner(v), true, inserted.first); |
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if (inserted.second && m_g.on_add_edge) |
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m_g.on_add_edge(e, m_g); |
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add_in_edge(e, property_ptr, directed_selector()); |
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} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::add_in_edge( |
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edge_descriptor const&, void*, directedS) |
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{} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::add_in_edge( |
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edge_descriptor const& edge, void* old_property_ptr, bidirectionalS) |
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{ |
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if (owner(target(edge, m_g)) == m_g.processor()) |
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{ |
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detail::parallel::stored_in_edge<local_edge_descriptor> |
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e(m_g.processor(), local(edge)); |
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boost::graph_detail::push(get( |
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vertex_in_edges, m_g.base())[local(target(edge, m_g))], e); |
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} |
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else |
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{ |
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// We send the (old,new) property pointer pair to |
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// the remote process. This could be optimized to |
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// only send the new one -- the ordering can be |
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// made implicit because the old pointer value is |
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// stored on the remote process. |
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// |
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// Doing that is a little bit more complicated, but |
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// in case it turns out it's important we can do it. |
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void* property_ptr = local(edge).get_property(); |
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m_property_ptrs[owner(target(edge, m_g))].push_back( |
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unsafe_pair<void*,void*>(old_property_ptr, property_ptr)); |
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} |
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} |
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template <class Graph, class Archive, class VertexListS> |
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void graph_loader<Graph, Archive, VertexListS>::resolve_property_ptrs() |
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{ |
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# ifdef PBGL_SERIALIZE_DEBUG |
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if (is_root()) |
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std::cout << "Resolving property pointers\n"; |
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# endif |
|
|
|
for (int i = 0; i < num_processes(m_pg); ++i) |
|
{ |
|
std::sort( |
|
m_property_ptrs[i].begin(), m_property_ptrs[i].end()); |
|
} |
|
|
|
boost::parallel::inplace_all_to_all(m_pg, m_property_ptrs); |
|
} |
|
|
|
template <class Graph, class Archive, class VertexListS> |
|
void graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertices(directedS) |
|
{ |
|
for (int i = 0; i < num_processes(m_pg); ++i) |
|
{ |
|
std::sort(m_requested_vertices[i].begin(), m_requested_vertices[i].end()); |
|
} |
|
|
|
boost::parallel::inplace_all_to_all( |
|
m_pg, m_requested_vertices, m_remote_vertices); |
|
|
|
for (int i = 0; i < num_processes(m_pg); ++i) |
|
{ |
|
BOOST_FOREACH(serializable_vertex_descriptor& u, m_remote_vertices[i]) |
|
{ |
|
u = m_local_vertices[u]; |
|
} |
|
} |
|
|
|
boost::parallel::inplace_all_to_all(m_pg, m_remote_vertices); |
|
} |
|
|
|
template <class Graph, class Archive, class VertexListS> |
|
void graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertices(bidirectionalS) |
|
{ |
|
# ifdef PBGL_SERIALIZE_DEBUG |
|
if (is_root()) |
|
std::cout << "Resolving remote vertices\n"; |
|
# endif |
|
|
|
for (int i = 0; i < num_processes(m_pg); ++i) |
|
{ |
|
std::sort(m_requested_vertices[i].begin(), m_requested_vertices[i].end()); |
|
std::sort(m_remote_vertices[i].begin(), m_remote_vertices[i].end()); |
|
|
|
BOOST_FOREACH(serializable_vertex_descriptor& u, m_remote_vertices[i]) |
|
{ |
|
u = m_local_vertices[u]; |
|
} |
|
} |
|
|
|
boost::parallel::inplace_all_to_all(m_pg, m_remote_vertices); |
|
|
|
for (int i = 0; i < num_processes(m_pg); ++i) |
|
BOOST_ASSERT(m_remote_vertices[i].size() == m_requested_vertices[i].size()); |
|
} |
|
|
|
template <class Graph, class Archive, class VertexListS> |
|
void graph_loader<Graph, Archive, VertexListS>::commit_pending_edges(vecS) |
|
{ |
|
commit_pending_in_edges(directed_selector()); |
|
} |
|
|
|
template <class Graph, class Archive, class VertexListS> |
|
template <class Anything> |
|
void graph_loader<Graph, Archive, VertexListS>::commit_pending_edges(Anything) |
|
{ |
|
resolve_remote_vertices(directed_selector()); |
|
|
|
BOOST_FOREACH(pending_edge_type const& e, m_pending_edges) |
|
{ |
|
vertex_descriptor u = resolve_remote_vertex(e.source); |
|
vertex_descriptor v = resolve_remote_vertex(e.target); |
|
add_edge(u, v, e.properties, e.property_ptr, vecS()); |
|
} |
|
|
|
commit_pending_in_edges(directed_selector()); |
|
} |
|
|
|
template <class Graph, class Archive, class VertexListS> |
|
void graph_loader<Graph, Archive, VertexListS>::commit_pending_in_edges(directedS) |
|
{} |
|
|
|
template <class Graph, class Archive, class VertexListS> |
|
void graph_loader<Graph, Archive, VertexListS>::commit_pending_in_edges(bidirectionalS) |
|
{ |
|
resolve_property_ptrs(); |
|
|
|
BOOST_FOREACH(pending_in_edge const& e, m_pending_in_edges) |
|
{ |
|
vertex_descriptor u = resolve_remote_vertex(e.u, vertex_list_selector()); |
|
vertex_descriptor v = resolve_remote_vertex(e.v, vertex_list_selector()); |
|
|
|
typedef detail::parallel::stored_in_edge<local_edge_descriptor> stored_edge; |
|
|
|
std::vector<unsafe_pair<void*,void*> >::iterator i = std::lower_bound( |
|
m_property_ptrs[owner(u)].begin() |
|
, m_property_ptrs[owner(u)].end() |
|
, unsafe_pair<void*,void*>(e.property_ptr, 0) |
|
); |
|
|
|
if (i == m_property_ptrs[owner(u)].end() |
|
|| i->first != e.property_ptr) |
|
{ |
|
BOOST_ASSERT(false); |
|
} |
|
|
|
local_edge_descriptor local_edge(local(u), local(v), i->second); |
|
stored_edge edge(owner(u), local_edge); |
|
boost::graph_detail::push( |
|
get(vertex_in_edges, m_g.base())[local(v)], edge); |
|
} |
|
} |
|
|
|
template <class Graph, class Archive, class VertexListS> |
|
typename graph_loader<Graph, Archive, VertexListS>::vertex_descriptor |
|
graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertex( |
|
vertex_descriptor u) const |
|
{ |
|
if (owner(u) == process_id(m_pg)) |
|
{ |
|
return vertex_descriptor( |
|
process_id(m_pg), m_local_vertices.find(local(u))->second); |
|
} |
|
|
|
typename std::vector<serializable_vertex_descriptor>::const_iterator |
|
i = std::lower_bound( |
|
m_requested_vertices[owner(u)].begin() |
|
, m_requested_vertices[owner(u)].end() |
|
, serializable_vertex_descriptor(local(u)) |
|
); |
|
|
|
if (i == m_requested_vertices[owner(u)].end() |
|
|| *i != local(u)) |
|
{ |
|
BOOST_ASSERT(false); |
|
} |
|
|
|
local_vertex_descriptor local = |
|
m_remote_vertices[owner(u)][m_requested_vertices[owner(u)].end() - i]; |
|
return vertex_descriptor(owner(u), local); |
|
} |
|
|
|
template <class Graph, class Archive, class VertexListS> |
|
typename graph_loader<Graph, Archive, VertexListS>::vertex_descriptor |
|
graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertex( |
|
vertex_descriptor u, vecS) const |
|
{ |
|
return u; |
|
} |
|
|
|
template <class Graph, class Archive, class VertexListS> |
|
template <class Anything> |
|
typename graph_loader<Graph, Archive, VertexListS>::vertex_descriptor |
|
graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertex( |
|
vertex_descriptor u, Anything) const |
|
{ |
|
return resolve_remote_vertex(u); |
|
} |
|
|
|
template <class Graph, class Archive, class VertexListS> |
|
void* |
|
graph_loader<Graph, Archive, VertexListS>::maybe_load_property_ptr(bidirectionalS) |
|
{ |
|
void* ptr; |
|
m_ar >> make_nvp("property_ptr", unsafe_serialize(ptr)); |
|
return ptr; |
|
} |
|
|
|
template <class Archive, class D> |
|
void maybe_save_local_descriptor(Archive& ar, D const&, vecS) |
|
{} |
|
|
|
template <class Archive, class D, class NotVecS> |
|
void maybe_save_local_descriptor(Archive& ar, D const& d, NotVecS) |
|
{ |
|
ar << serialization::make_nvp( |
|
"local", unsafe_serialize(const_cast<D&>(d))); |
|
} |
|
|
|
template <class Archive> |
|
void maybe_save_properties( |
|
Archive&, char const*, no_property const&) |
|
{} |
|
|
|
template <class Archive, class Tag, class T, class Base> |
|
void maybe_save_properties( |
|
Archive& ar, char const* name, property<Tag, T, Base> const& properties) |
|
{ |
|
ar & serialization::make_nvp(name, get_property_value(properties, Tag())); |
|
maybe_save_properties(ar, name, static_cast<Base const&>(properties)); |
|
} |
|
|
|
template <class Archive, class Graph> |
|
void save_in_edges(Archive& ar, Graph const& g, directedS) |
|
{} |
|
|
|
// We need to save the edges in the base edge |
|
// list, and the in_edges that are stored in the |
|
// vertex_in_edges vertex property. |
|
template <class Archive, class Graph> |
|
void save_in_edges(Archive& ar, Graph const& g, bidirectionalS) |
|
{ |
|
typedef typename Graph::process_group_type |
|
process_group_type; |
|
typedef typename process_group_type::process_id_type |
|
process_id_type; |
|
typedef typename graph_traits< |
|
Graph>::vertex_descriptor vertex_descriptor; |
|
typedef typename vertex_descriptor::local_descriptor_type |
|
local_vertex_descriptor; |
|
typedef typename graph_traits< |
|
Graph>::edge_descriptor edge_descriptor; |
|
|
|
process_id_type id = g.processor(); |
|
|
|
typedef std::pair<local_vertex_descriptor, vertex_descriptor> in_edge; |
|
std::vector<edge_descriptor> saved_in_edges; |
|
|
|
BGL_FORALL_VERTICES_T(v, g, Graph) |
|
{ |
|
BOOST_FOREACH(edge_descriptor const& e, in_edges(v, g)) |
|
{ |
|
// Only save the in_edges that isn't owned by this process. |
|
if (owner(e) == id) |
|
continue; |
|
|
|
saved_in_edges.push_back(e); |
|
} |
|
} |
|
|
|
std::size_t I = saved_in_edges.size(); |
|
ar << BOOST_SERIALIZATION_NVP(I); |
|
|
|
BOOST_FOREACH(edge_descriptor const& e, saved_in_edges) |
|
{ |
|
process_id_type src_owner = owner(source(e,g)); |
|
local_vertex_descriptor local_src = local(source(e,g)); |
|
local_vertex_descriptor local_target = local(target(e,g)); |
|
void* property_ptr = local(e).get_property(); |
|
|
|
using serialization::make_nvp; |
|
|
|
ar << make_nvp("src_owner", src_owner); |
|
ar << make_nvp("source", unsafe_serialize(local_src)); |
|
ar << make_nvp("target", unsafe_serialize(local_target)); |
|
ar << make_nvp("property_ptr", unsafe_serialize(property_ptr)); |
|
} |
|
} |
|
|
|
template <class Archive, class Edge> |
|
void maybe_save_property_ptr(Archive&, Edge const&, directedS) |
|
{} |
|
|
|
template <class Archive, class Edge> |
|
void maybe_save_property_ptr(Archive& ar, Edge const& e, bidirectionalS) |
|
{ |
|
void* ptr = local(e).get_property(); |
|
ar << serialization::make_nvp("property_ptr", unsafe_serialize(ptr)); |
|
} |
|
|
|
template <class Archive, class Graph, class DirectedS> |
|
void save_edges(Archive& ar, Graph const& g, DirectedS) |
|
{ |
|
typedef typename Graph::process_group_type |
|
process_group_type; |
|
typedef typename process_group_type::process_id_type |
|
process_id_type; |
|
typedef typename graph_traits< |
|
Graph>::vertex_descriptor vertex_descriptor; |
|
typedef typename graph_traits< |
|
Graph>::edge_descriptor edge_descriptor; |
|
|
|
// We retag the property list here so that bundled properties are |
|
// properly placed into property<edge_bundle_t, Bundle>. |
|
typedef typename boost::detail::retag_property_list< |
|
edge_bundle_t, |
|
typename Graph::edge_property_type>::type |
|
edge_property_type; |
|
|
|
int E = num_edges(g); |
|
ar << BOOST_SERIALIZATION_NVP(E); |
|
|
|
// For *directed* graphs, we can just save |
|
// the edge list and be done. |
|
// |
|
// For *bidirectional* graphs, we need to also |
|
// save the "vertex_in_edges" property map, |
|
// because it might contain in-edges that |
|
// are not locally owned. |
|
BGL_FORALL_EDGES_T(e, g, Graph) |
|
{ |
|
vertex_descriptor src(source(e, g)); |
|
vertex_descriptor tgt(target(e, g)); |
|
|
|
typename vertex_descriptor::local_descriptor_type |
|
local_u(local(src)); |
|
typename vertex_descriptor::local_descriptor_type |
|
local_v(local(tgt)); |
|
|
|
process_id_type target_owner = owner(tgt); |
|
|
|
using serialization::make_nvp; |
|
|
|
ar << make_nvp("source", unsafe_serialize(local_u)); |
|
ar << make_nvp("target_owner", target_owner); |
|
ar << make_nvp("target", unsafe_serialize(local_v)); |
|
|
|
maybe_save_properties( |
|
ar, "edge_property" |
|
, static_cast<edge_property_type const&>(get(edge_all_t(), g, e)) |
|
); |
|
|
|
maybe_save_property_ptr(ar, e, DirectedS()); |
|
} |
|
|
|
save_in_edges(ar, g, DirectedS()); |
|
} |
|
|
|
}} // namespace detail::parallel |
|
|
|
template <PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS> |
|
template <class IStreamConstructibleArchive> |
|
void PBGL_DISTRIB_ADJLIST_TYPE::load(std::string const& filename) |
|
{ |
|
typedef typename config_type::VertexListS vertex_list_selector; |
|
|
|
process_group_type pg = process_group(); |
|
process_id_type id = process_id(pg); |
|
|
|
synchronize(pg); |
|
|
|
std::vector<int> disk_files = detail::parallel::available_process_files(filename); |
|
std::sort(disk_files.begin(), disk_files.end()); |
|
|
|
// Negotiate which process gets which file. Serialized. |
|
std::vector<int> consumed_files; |
|
int picked_file = -1; |
|
|
|
if (id > 0) |
|
receive_oob(pg, id-1, 0, consumed_files); |
|
|
|
std::sort(consumed_files.begin(), consumed_files.end()); |
|
std::vector<int> available_files; |
|
std::set_difference( |
|
disk_files.begin(), disk_files.end() |
|
, consumed_files.begin(), consumed_files.end() |
|
, std::back_inserter(available_files) |
|
); |
|
|
|
if (available_files.empty()) |
|
boost::throw_exception(std::runtime_error("no file available")); |
|
|
|
// back() used for debug purposes. Making sure the |
|
// ranks are shuffled. |
|
picked_file = available_files.back(); |
|
|
|
# ifdef PBGL_SERIALIZE_DEBUG |
|
std::cout << id << " picked " << picked_file << "\n"; |
|
# endif |
|
|
|
consumed_files.push_back(picked_file); |
|
|
|
if (id < num_processes(pg) - 1) |
|
send_oob(pg, id+1, 0, consumed_files); |
|
|
|
std::string local_filename = filename + "/" + |
|
lexical_cast<std::string>(picked_file); |
|
|
|
std::ifstream in(local_filename.c_str(), std::ios_base::binary); |
|
IStreamConstructibleArchive ar(in); |
|
|
|
detail::parallel::graph_loader< |
|
graph_type, IStreamConstructibleArchive, InVertexListS |
|
> loader(*this, ar); |
|
|
|
# ifdef PBGL_SERIALIZE_DEBUG |
|
std::cout << "Process " << id << " done loading.\n"; |
|
# endif |
|
|
|
synchronize(pg); |
|
} |
|
|
|
template <PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS> |
|
template <class OStreamConstructibleArchive> |
|
void PBGL_DISTRIB_ADJLIST_TYPE::save(std::string const& filename) const |
|
{ |
|
// We retag the property list here so that bundled properties are |
|
// properly placed into property<vertex_bundle_t, Bundle>. |
|
typedef typename boost::detail::retag_property_list< |
|
vertex_bundle_t, vertex_property_type |
|
>::type vertex_property_type; |
|
|
|
typedef typename config_type::VertexListS vertex_list_selector; |
|
|
|
process_group_type pg = process_group(); |
|
process_id_type id = process_id(pg); |
|
|
|
if (filesystem::exists(filename) && !filesystem::is_directory(filename)) |
|
boost::throw_exception(std::runtime_error("entry exists, but is not a directory")); |
|
|
|
filesystem::remove_all(filename); |
|
filesystem::create_directory(filename); |
|
|
|
synchronize(pg); |
|
|
|
std::string local_filename = filename + "/" + |
|
lexical_cast<std::string>(id); |
|
|
|
std::ofstream out(local_filename.c_str(), std::ios_base::binary); |
|
OStreamConstructibleArchive ar(out); |
|
|
|
using serialization::make_nvp; |
|
|
|
typename process_group_type::process_size_type num_processes_ = num_processes(pg); |
|
ar << make_nvp("num_processes", num_processes_); |
|
ar << BOOST_SERIALIZATION_NVP(id); |
|
ar << make_nvp("mapping", this->distribution().mapping()); |
|
|
|
int V = num_vertices(*this); |
|
ar << BOOST_SERIALIZATION_NVP(V); |
|
|
|
BGL_FORALL_VERTICES_T(v, *this, graph_type) |
|
{ |
|
local_vertex_descriptor local_descriptor(local(v)); |
|
detail::parallel::maybe_save_local_descriptor( |
|
ar, local_descriptor, vertex_list_selector()); |
|
detail::parallel::maybe_save_properties( |
|
ar, "vertex_property" |
|
, static_cast<vertex_property_type const&>(get(vertex_all_t(), *this, v)) |
|
); |
|
} |
|
|
|
detail::parallel::save_edges(ar, *this, directed_selector()); |
|
|
|
ar << make_nvp("distribution", this->distribution()); |
|
} |
|
|
|
} // namespace boost |
|
|
|
#endif // BOOST_GRAPH_DISTRIBUTED_ADJLIST_SERIALIZATION_070925_HPP |
|
|
|
|