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393 lines
14 KiB
393 lines
14 KiB
// Copyright (C) 2005-2006 The Trustees of Indiana University. |
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// Use, modification and distribution is subject to the Boost Software |
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// License, Version 1.0. (See accompanying file LICENSE_1_0.txt or copy at |
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// http://www.boost.org/LICENSE_1_0.txt) |
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// Authors: Douglas Gregor |
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// Andrew Lumsdaine |
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// |
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// Implements redistribution of vertices for a distributed adjacency |
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// list. This file should not be included by users. It will be |
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// included by the distributed adjacency list header. |
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// |
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#ifndef BOOST_GRAPH_USE_MPI |
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#error "Parallel BGL files should not be included unless <boost/graph/use_mpi.hpp> has been included" |
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#endif |
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#include <boost/pending/container_traits.hpp> |
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namespace boost { namespace detail { namespace parallel { |
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/* This structure contains a (vertex or edge) descriptor that is being |
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moved from one processor to another. It contains the properties for |
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that descriptor (if any). |
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*/ |
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template<typename Descriptor, typename DescriptorProperty> |
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struct redistributed_descriptor : maybe_store_property<DescriptorProperty> |
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{ |
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typedef maybe_store_property<DescriptorProperty> inherited; |
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redistributed_descriptor() { } |
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redistributed_descriptor(const Descriptor& v, const DescriptorProperty& p) |
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: inherited(p), descriptor(v) { } |
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Descriptor descriptor; |
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private: |
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friend class boost::serialization::access; |
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template<typename Archiver> |
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void serialize(Archiver& ar, unsigned int /*version*/) |
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{ |
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ar & boost::serialization::base_object<inherited>(*this) |
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& unsafe_serialize(descriptor); |
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} |
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}; |
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/* Predicate that returns true if the target has migrated. */ |
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template<typename VertexProcessorMap, typename Graph> |
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struct target_migrated_t |
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{ |
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typedef typename graph_traits<Graph>::vertex_descriptor Vertex; |
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typedef typename graph_traits<Graph>::edge_descriptor Edge; |
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target_migrated_t(VertexProcessorMap vertex_to_processor, const Graph& g) |
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: vertex_to_processor(vertex_to_processor), g(g) { } |
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bool operator()(Edge e) const |
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{ |
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typedef global_descriptor<Vertex> DVertex; |
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processor_id_type owner = get(edge_target_processor_id, g, e); |
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return get(vertex_to_processor, DVertex(owner, target(e, g))) != owner; |
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} |
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private: |
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VertexProcessorMap vertex_to_processor; |
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const Graph& g; |
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}; |
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template<typename VertexProcessorMap, typename Graph> |
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inline target_migrated_t<VertexProcessorMap, Graph> |
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target_migrated(VertexProcessorMap vertex_to_processor, const Graph& g) |
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{ return target_migrated_t<VertexProcessorMap, Graph>(vertex_to_processor, g); } |
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/* Predicate that returns true if the source of an in-edge has migrated. */ |
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template<typename VertexProcessorMap, typename Graph> |
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struct source_migrated_t |
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{ |
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typedef typename graph_traits<Graph>::vertex_descriptor Vertex; |
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typedef typename graph_traits<Graph>::edge_descriptor Edge; |
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source_migrated_t(VertexProcessorMap vertex_to_processor, const Graph& g) |
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: vertex_to_processor(vertex_to_processor), g(g) { } |
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bool operator()(stored_in_edge<Edge> e) const |
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{ |
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return get(vertex_to_processor, DVertex(e.source_processor, source(e.e, g))) |
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!= e.source_processor; |
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} |
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private: |
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VertexProcessorMap vertex_to_processor; |
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const Graph& g; |
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}; |
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template<typename VertexProcessorMap, typename Graph> |
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inline source_migrated_t<VertexProcessorMap, Graph> |
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source_migrated(VertexProcessorMap vertex_to_processor, const Graph& g) |
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{ return source_migrated_t<VertexProcessorMap, Graph>(vertex_to_processor, g); } |
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/* Predicate that returns true if the target has migrated. */ |
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template<typename VertexProcessorMap, typename Graph> |
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struct source_or_target_migrated_t |
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{ |
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typedef typename graph_traits<Graph>::edge_descriptor Edge; |
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source_or_target_migrated_t(VertexProcessorMap vertex_to_processor, |
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const Graph& g) |
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: vertex_to_processor(vertex_to_processor), g(g) { } |
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bool operator()(Edge e) const |
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{ |
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return get(vertex_to_processor, source(e, g)) != source(e, g).owner |
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|| get(vertex_to_processor, target(e, g)) != target(e, g).owner; |
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} |
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private: |
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VertexProcessorMap vertex_to_processor; |
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const Graph& g; |
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}; |
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template<typename VertexProcessorMap, typename Graph> |
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inline source_or_target_migrated_t<VertexProcessorMap, Graph> |
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source_or_target_migrated(VertexProcessorMap vertex_to_processor, |
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const Graph& g) |
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{ |
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typedef source_or_target_migrated_t<VertexProcessorMap, Graph> result_type; |
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return result_type(vertex_to_processor, g); |
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} |
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} } // end of namespace detail::parallel |
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template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS> |
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template<typename VertexProcessorMap> |
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void |
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PBGL_DISTRIB_ADJLIST_TYPE |
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::request_in_neighbors(vertex_descriptor v, |
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VertexProcessorMap vertex_to_processor, |
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bidirectionalS) |
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{ |
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BGL_FORALL_INEDGES_T(v, e, *this, graph_type) |
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request(vertex_to_processor, source(e, *this)); |
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} |
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template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS> |
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template<typename VertexProcessorMap> |
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void |
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PBGL_DISTRIB_ADJLIST_TYPE |
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::remove_migrated_in_edges(vertex_descriptor v, |
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VertexProcessorMap vertex_to_processor, |
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bidirectionalS) |
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{ |
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graph_detail::erase_if(get(vertex_in_edges, base())[v.local], |
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source_migrated(vertex_to_processor, base())); |
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} |
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template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS> |
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template<typename VertexProcessorMap> |
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void |
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PBGL_DISTRIB_ADJLIST_TYPE |
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::redistribute(VertexProcessorMap vertex_to_processor) |
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{ |
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using boost::parallel::inplace_all_to_all; |
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// When we have stable descriptors, we only move those descriptors |
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// that actually need to be moved. Otherwise, we essentially have to |
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// regenerate the entire graph. |
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const bool has_stable_descriptors = |
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is_same<typename config_type::vertex_list_selector, listS>::value |
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|| is_same<typename config_type::vertex_list_selector, setS>::value |
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|| is_same<typename config_type::vertex_list_selector, multisetS>::value; |
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typedef detail::parallel::redistributed_descriptor<vertex_descriptor, |
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vertex_property_type> |
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redistributed_vertex; |
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typedef detail::parallel::redistributed_descriptor<edge_descriptor, |
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edge_property_type> |
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redistributed_edge; |
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typedef std::pair<vertices_size_type, edges_size_type> num_relocated_pair; |
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vertex_iterator vi, vi_end; |
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edge_iterator ei, ei_end; |
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process_group_type pg = process_group(); |
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// Initial synchronization makes sure that we have all of our ducks |
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// in a row. We don't want any outstanding add/remove messages |
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// coming in mid-redistribution! |
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synchronize(process_group_); |
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// We cannot cope with eviction of ghost cells |
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vertex_to_processor.set_max_ghost_cells(0); |
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process_id_type p = num_processes(pg); |
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// Send vertices and edges to the processor where they will |
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// actually reside. This requires O(|V| + |E|) communication |
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std::vector<std::vector<redistributed_vertex> > redistributed_vertices(p); |
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std::vector<std::vector<redistributed_edge> > redistributed_edges(p); |
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// Build the sets of relocated vertices for each process and then do |
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// an all-to-all transfer. |
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for (boost::tie(vi, vi_end) = vertices(*this); vi != vi_end; ++vi) { |
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if (!has_stable_descriptors |
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|| get(vertex_to_processor, *vi) != vi->owner) { |
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redistributed_vertices[get(vertex_to_processor, *vi)] |
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.push_back(redistributed_vertex(*vi, get(vertex_all_t(), base(), |
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vi->local))); |
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} |
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// When our descriptors are stable, we need to determine which |
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// adjacent descriptors are stable to determine which edges will |
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// be removed. |
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if (has_stable_descriptors) { |
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BGL_FORALL_OUTEDGES_T(*vi, e, *this, graph_type) |
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request(vertex_to_processor, target(e, *this)); |
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request_in_neighbors(*vi, vertex_to_processor, directed_selector()); |
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} |
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} |
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inplace_all_to_all(pg, redistributed_vertices); |
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// If we have stable descriptors, we need to know where our neighbor |
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// vertices are moving. |
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if (has_stable_descriptors) |
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synchronize(vertex_to_processor); |
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// Build the sets of relocated edges for each process and then do |
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// an all-to-all transfer. |
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for (boost::tie(ei, ei_end) = edges(*this); ei != ei_end; ++ei) { |
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vertex_descriptor src = source(*ei, *this); |
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vertex_descriptor tgt = target(*ei, *this); |
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if (!has_stable_descriptors |
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|| get(vertex_to_processor, src) != src.owner |
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|| get(vertex_to_processor, tgt) != tgt.owner) |
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redistributed_edges[get(vertex_to_processor, source(*ei, *this))] |
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.push_back(redistributed_edge(*ei, get(edge_all_t(), base(), |
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ei->local))); |
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} |
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inplace_all_to_all(pg, redistributed_edges); |
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// A mapping from old vertex descriptors to new vertex |
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// descriptors. This is an STL map partly because I'm too lazy to |
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// build a real property map (which is hard in the general case) but |
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// also because it won't try to look in the graph itself, because |
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// the keys are all vertex descriptors that have been invalidated. |
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std::map<vertex_descriptor, vertex_descriptor> old_to_new_vertex_map; |
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if (has_stable_descriptors) { |
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// Clear out all vertices and edges that will have moved. There |
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// are several stages to this. |
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// First, eliminate all outgoing edges from the (local) vertices |
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// that have been moved or whose targets have been moved. |
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BGL_FORALL_VERTICES_T(v, *this, graph_type) { |
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if (get(vertex_to_processor, v) != v.owner) { |
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clear_out_edges(v.local, base()); |
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clear_in_edges_local(v, directed_selector()); |
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} else { |
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remove_out_edge_if(v.local, |
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target_migrated(vertex_to_processor, base()), |
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base()); |
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remove_migrated_in_edges(v, vertex_to_processor, directed_selector()); |
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} |
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} |
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// Next, eliminate locally-stored edges that have migrated (for |
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// undirected graphs). |
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graph_detail::erase_if(local_edges_, |
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source_or_target_migrated(vertex_to_processor, *this)); |
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// Eliminate vertices that have migrated |
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for (boost::tie(vi, vi_end) = vertices(*this); vi != vi_end; /* in loop */) { |
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if (get(vertex_to_processor, *vi) != vi->owner) |
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remove_vertex((*vi++).local, base()); |
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else { |
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// Add the identity relation for vertices that have not migrated |
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old_to_new_vertex_map[*vi] = *vi; |
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++vi; |
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} |
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} |
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} else { |
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// Clear out the local graph: the entire graph is in transit |
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clear(); |
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} |
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// Add the new vertices to the graph. When we do so, update the old |
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// -> new vertex mapping both locally and for the owner of the "old" |
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// vertex. |
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{ |
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typedef std::pair<vertex_descriptor, vertex_descriptor> mapping_pair; |
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std::vector<std::vector<mapping_pair> > mappings(p); |
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for (process_id_type src = 0; src < p; ++src) { |
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for (typename std::vector<redistributed_vertex>::iterator vi = |
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redistributed_vertices[src].begin(); |
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vi != redistributed_vertices[src].end(); ++vi) { |
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vertex_descriptor new_vertex = |
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add_vertex(vi->get_property(), *this); |
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old_to_new_vertex_map[vi->descriptor] = new_vertex; |
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mappings[vi->descriptor.owner].push_back(mapping_pair(vi->descriptor, |
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new_vertex)); |
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} |
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redistributed_vertices[src].clear(); |
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} |
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inplace_all_to_all(pg, mappings); |
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// Add the mappings we were sent into the old->new map. |
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for (process_id_type src = 0; src < p; ++src) |
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old_to_new_vertex_map.insert(mappings[src].begin(), mappings[src].end()); |
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} |
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// Get old->new vertex mappings for all of the vertices we need to |
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// know about. |
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// TBD: An optimization here might involve sending the |
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// request-response pairs without an explicit request step (for |
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// bidirectional and undirected graphs). However, it may not matter |
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// all that much given the cost of redistribution. |
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{ |
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std::vector<std::vector<vertex_descriptor> > vertex_map_requests(p); |
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std::vector<std::vector<vertex_descriptor> > vertex_map_responses(p); |
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// We need to know about all of the vertices incident on edges |
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// that have been relocated to this processor. Tell each processor |
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// what each other processor needs to know. |
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for (process_id_type src = 0; src < p; ++src) |
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for (typename std::vector<redistributed_edge>::iterator ei = |
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redistributed_edges[src].begin(); |
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ei != redistributed_edges[src].end(); ++ei) { |
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vertex_descriptor need_vertex = target(ei->descriptor, *this); |
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if (old_to_new_vertex_map.find(need_vertex) |
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== old_to_new_vertex_map.end()) |
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{ |
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old_to_new_vertex_map[need_vertex] = need_vertex; |
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vertex_map_requests[need_vertex.owner].push_back(need_vertex); |
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} |
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} |
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inplace_all_to_all(pg, |
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vertex_map_requests, |
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vertex_map_responses); |
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// Process the requests made for vertices we own. Then perform yet |
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// another all-to-all swap. This one matches the requests we've |
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// made to the responses we were given. |
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for (process_id_type src = 0; src < p; ++src) |
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for (typename std::vector<vertex_descriptor>::iterator vi = |
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vertex_map_responses[src].begin(); |
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vi != vertex_map_responses[src].end(); ++vi) |
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*vi = old_to_new_vertex_map[*vi]; |
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inplace_all_to_all(pg, vertex_map_responses); |
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// Matching the requests to the responses, update the old->new |
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// vertex map for all of the vertices we will need to know. |
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for (process_id_type src = 0; src < p; ++src) { |
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typedef typename std::vector<vertex_descriptor>::size_type size_type; |
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for (size_type i = 0; i < vertex_map_requests[src].size(); ++i) { |
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old_to_new_vertex_map[vertex_map_requests[src][i]] = |
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vertex_map_responses[src][i]; |
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} |
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} |
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} |
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// Add edges to the graph by mapping the source and target. |
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for (process_id_type src = 0; src < p; ++src) { |
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for (typename std::vector<redistributed_edge>::iterator ei = |
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redistributed_edges[src].begin(); |
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ei != redistributed_edges[src].end(); ++ei) { |
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add_edge(old_to_new_vertex_map[source(ei->descriptor, *this)], |
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old_to_new_vertex_map[target(ei->descriptor, *this)], |
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ei->get_property(), |
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*this); |
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} |
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redistributed_edges[src].clear(); |
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} |
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// Be sure that edge-addition messages are received now, completing |
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// the graph. |
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synchronize(process_group_); |
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this->distribution().clear(); |
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detail::parallel::maybe_initialize_vertex_indices(vertices(base()), |
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get(vertex_index, base())); |
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} |
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} // end namespace boost
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